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Cluster: Rep_950_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_950_c_14 Rep_950_c_14_541 547504 549201 - GT83
TC Rep_950_c_14 Rep_950_c_14_542 549396 549788 - 2.A.7.22.2
TC Rep_950_c_14 Rep_950_c_14_543 549788 550138 - 2.A.7.22.2
CAZyme Rep_950_c_14 Rep_950_c_14_544 550145 551806 - GT83
pfam Rep_950_c_14 Rep_950_c_14_545 551813 552706 - Polysacc_deac_1
pfam Rep_950_c_14 Rep_950_c_14_546 552706 554691 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme Rep_950_c_14 Rep_950_c_14_547 554691 555680 - GT2
STP Rep_950_c_14 Rep_950_c_14_548 555681 556826 - Aminotran_1_2
TC Rep_950_c_14 Rep_950_c_14_549 556970 557743 - 3.A.1.13.1
TC Rep_950_c_14 Rep_950_c_14_550 557743 558753 - 3.A.1.13.1
Gene ID: Rep_950_c_14_541
Type: CAZyme
Location: 547504 - 549201 (-)
Gene ID: Rep_950_c_14_542
Type: TC
Location: 549396 - 549788 (-)
Gene ID: Rep_950_c_14_543
Type: TC
Location: 549788 - 550138 (-)
Gene ID: Rep_950_c_14_544
Type: CAZyme
Location: 550145 - 551806 (-)
Gene ID: Rep_950_c_14_545
Type: pfam
Location: 551813 - 552706 (-)
Gene ID: Rep_950_c_14_546
Type: pfam
Location: 552706 - 554691 (-)
Gene ID: Rep_950_c_14_547
Type: CAZyme
Location: 554691 - 555680 (-)
Gene ID: Rep_950_c_14_548
Type: STP
Location: 555681 - 556826 (-)
Gene ID: Rep_950_c_14_549
Type: TC
Location: 556970 - 557743 (-)
Gene ID: Rep_950_c_14_550
Type: TC
Location: 557743 - 558753 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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