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Cluster: Rep_948_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_948_c_5 Rep_948_c_5_40 39626 40660 + 3.A.1.13.1
TC Rep_948_c_5 Rep_948_c_5_41 40662 41411 + 3.A.1.13.1
STP Rep_948_c_5 Rep_948_c_5_42 41546 42691 + Aminotran_1_2
CAZyme Rep_948_c_5 Rep_948_c_5_43 42691 43671 + GT2
pfam Rep_948_c_5 Rep_948_c_5_44 43671 45653 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam Rep_948_c_5 Rep_948_c_5_45 45653 46546 + Polysacc_deac_1
CAZyme Rep_948_c_5 Rep_948_c_5_46 46554 48215 + GT83
TC Rep_948_c_5 Rep_948_c_5_47 48215 48556 + 2.A.7.22.1
TC Rep_948_c_5 Rep_948_c_5_48 48553 48954 + 2.A.7.22.1
Gene ID: Rep_948_c_5_40
Type: TC
Location: 39626 - 40660 (+)
Gene ID: Rep_948_c_5_41
Type: TC
Location: 40662 - 41411 (+)
Gene ID: Rep_948_c_5_42
Type: STP
Location: 41546 - 42691 (+)
Gene ID: Rep_948_c_5_43
Type: CAZyme
Location: 42691 - 43671 (+)
Gene ID: Rep_948_c_5_44
Type: pfam
Location: 43671 - 45653 (+)
Gene ID: Rep_948_c_5_45
Type: pfam
Location: 45653 - 46546 (+)
Gene ID: Rep_948_c_5_46
Type: CAZyme
Location: 46554 - 48215 (+)
Gene ID: Rep_948_c_5_47
Type: TC
Location: 48215 - 48556 (+)
Gene ID: Rep_948_c_5_48
Type: TC
Location: 48553 - 48954 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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