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Cluster: Rep_948_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_948_c_3 Rep_948_c_3_6 4266 4886 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_7 4888 6903 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_8 6913 7866 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_9 7882 9321 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_10 9333 9983 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_11 9988 11556 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_12 11558 13291 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_13 13303 13857 + 3.D.1.9.1
TC Rep_948_c_3 Rep_948_c_3_14 13854 14636 + 3.D.1.9.1
pfam Rep_948_c_3 Rep_948_c_3_15 14629 15039 + HycH
peptidase Rep_948_c_3 Rep_948_c_3_16 15036 15536 + A31.003
CAZyme Rep_948_c_3 Rep_948_c_3_17 15954 16946 + GT2
TC Rep_948_c_3 Rep_948_c_3_18 17347 18930 + 3.A.1.5.3
TC Rep_948_c_3 Rep_948_c_3_19 18921 19898 + 3.A.1.5.11
TC Rep_948_c_3 Rep_948_c_3_20 19895 20707 + 3.A.1.5.20
TC Rep_948_c_3 Rep_948_c_3_21 20701 21504 + 3.A.1.5.3
TC Rep_948_c_3 Rep_948_c_3_22 21572 22183 + 3.A.1.5.6
Gene ID: Rep_948_c_3_6
Type: TC
Location: 4266 - 4886 (+)
Gene ID: Rep_948_c_3_7
Type: TC
Location: 4888 - 6903 (+)
Gene ID: Rep_948_c_3_8
Type: TC
Location: 6913 - 7866 (+)
Gene ID: Rep_948_c_3_9
Type: TC
Location: 7882 - 9321 (+)
Gene ID: Rep_948_c_3_10
Type: TC
Location: 9333 - 9983 (+)
Gene ID: Rep_948_c_3_11
Type: TC
Location: 9988 - 11556 (+)
Gene ID: Rep_948_c_3_12
Type: TC
Location: 11558 - 13291 (+)
Gene ID: Rep_948_c_3_13
Type: TC
Location: 13303 - 13857 (+)
Gene ID: Rep_948_c_3_14
Type: TC
Location: 13854 - 14636 (+)
Gene ID: Rep_948_c_3_15
Type: pfam
Location: 14629 - 15039 (+)
Gene ID: Rep_948_c_3_16
Type: peptidase
Location: 15036 - 15536 (+)
Gene ID: Rep_948_c_3_17
Type: CAZyme
Location: 15954 - 16946 (+)
Gene ID: Rep_948_c_3_18
Type: TC
Location: 17347 - 18930 (+)
Gene ID: Rep_948_c_3_19
Type: TC
Location: 18921 - 19898 (+)
Gene ID: Rep_948_c_3_20
Type: TC
Location: 19895 - 20707 (+)
Gene ID: Rep_948_c_3_21
Type: TC
Location: 20701 - 21504 (+)
Gene ID: Rep_948_c_3_22
Type: TC
Location: 21572 - 22183 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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