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Cluster: Rep_948_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_948_c_36 Rep_948_c_36_244 293909 295594 + 1.B.20.1.2
TC Rep_948_c_36 Rep_948_c_36_245 295628 300361 + 1.C.75.1.1
TC Rep_948_c_36 Rep_948_c_36_246 300629 303118 + 3.A.3.5.20
TF Rep_948_c_36 Rep_948_c_36_247 303227 303634 + MerR
TC Rep_948_c_36 Rep_948_c_36_248 303780 306488 - 3.A.5.1.1
pfam Rep_948_c_36 Rep_948_c_36_249 306596 307123 - SecM
pfam Rep_948_c_36 Rep_948_c_36_250 307167 307685 + DciA
CAZyme Rep_948_c_36 Rep_948_c_36_251 307716 308636 - CE11
Gene ID: Rep_948_c_36_244
Type: TC
Location: 293909 - 295594 (+)
Gene ID: Rep_948_c_36_245
Type: TC
Location: 295628 - 300361 (+)
Gene ID: Rep_948_c_36_246
Type: TC
Location: 300629 - 303118 (+)
Gene ID: Rep_948_c_36_247
Type: TF
Location: 303227 - 303634 (+)
Gene ID: Rep_948_c_36_248
Type: TC
Location: 303780 - 306488 (-)
Gene ID: Rep_948_c_36_249
Type: pfam
Location: 306596 - 307123 (-)
Gene ID: Rep_948_c_36_250
Type: pfam
Location: 307167 - 307685 (+)
Gene ID: Rep_948_c_36_251
Type: CAZyme
Location: 307716 - 308636 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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