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Cluster: Rep_948_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_948_c_29 Rep_948_c_29_37 42871 43686 + 1.A.8.1.1
pfam Rep_948_c_29 Rep_948_c_29_38 43729 45261 + FGGY_N | FGGY_C
TC Rep_948_c_29 Rep_948_c_29_39 45371 46555 - 2.A.1.2.9
pfam Rep_948_c_29 Rep_948_c_29_40 46894 47640 + NAD_binding_1 | FAD_binding_6
TC Rep_948_c_29 Rep_948_c_29_41 47701 48129 - 9.B.124.2.2
pfam Rep_948_c_29 Rep_948_c_29_42 48241 48876 + DUF1454
pfam Rep_948_c_29 Rep_948_c_29_43 48983 49753 + TIM
TC Rep_948_c_29 Rep_948_c_29_44 49849 50853 - 3.A.1.6.1
pfam Rep_948_c_29 Rep_948_c_29_45 51147 52124 - PFK
pfam Rep_948_c_29 Rep_948_c_29_46 52663 53418 + adh_short | KR | adh_short_C2
CAZyme Rep_948_c_29 Rep_948_c_29_47 53628 54782 + GT4
CAZyme Rep_948_c_29 Rep_948_c_29_48 54811 55635 + GT25
Gene ID: Rep_948_c_29_37
Type: TC
Location: 42871 - 43686 (+)
Gene ID: Rep_948_c_29_38
Type: pfam
Location: 43729 - 45261 (+)
Gene ID: Rep_948_c_29_39
Type: TC
Location: 45371 - 46555 (-)
Gene ID: Rep_948_c_29_40
Type: pfam
Location: 46894 - 47640 (+)
Gene ID: Rep_948_c_29_41
Type: TC
Location: 47701 - 48129 (-)
Gene ID: Rep_948_c_29_42
Type: pfam
Location: 48241 - 48876 (+)
Gene ID: Rep_948_c_29_43
Type: pfam
Location: 48983 - 49753 (+)
Gene ID: Rep_948_c_29_44
Type: TC
Location: 49849 - 50853 (-)
Gene ID: Rep_948_c_29_45
Type: pfam
Location: 51147 - 52124 (-)
Gene ID: Rep_948_c_29_46
Type: pfam
Location: 52663 - 53418 (+)
Gene ID: Rep_948_c_29_47
Type: CAZyme
Location: 53628 - 54782 (+)
Gene ID: Rep_948_c_29_48
Type: CAZyme
Location: 54811 - 55635 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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