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Cluster: Rep_948_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_948_c_22 Rep_948_c_22_25 26074 26715 - 5.A.3.3.1
TC Rep_948_c_22 Rep_948_c_22_26 26712 29129 - 5.A.3.3.2
TF Rep_948_c_22 Rep_948_c_22_27 29506 30276 + HTH_AraC | HTH_AraC
TC Rep_948_c_22 Rep_948_c_22_28 30301 31800 - 2.A.1.3.43
STP Rep_948_c_22 Rep_948_c_22_29 31892 32443 + TetR_N
TC Rep_948_c_22 Rep_948_c_22_30 32505 33260 - 3.A.1.14.7
pfam Rep_948_c_22 Rep_948_c_22_31 33262 34269 - FecCD
TC Rep_948_c_22 Rep_948_c_22_32 34256 35218 - 3.A.1.14.2
STP Rep_948_c_22 Rep_948_c_22_33 35228 36187 - Peripla_BP_2
TC Rep_948_c_22 Rep_948_c_22_34 36641 36967 + 4.A.3.2.1
TC Rep_948_c_22 Rep_948_c_22_35 37057 38415 + 4.A.3.2.7
TC Rep_948_c_22 Rep_948_c_22_36 38477 38824 + 4.A.3.2.1
TF Rep_948_c_22 Rep_948_c_22_37 38833 39681 + HTH_AraC | HTH_AraC
CAZyme Rep_948_c_22 Rep_948_c_22_38 39842 41194 + GH4
pfam Rep_948_c_22 Rep_948_c_22_39 41232 41993 + YdjC
TC Rep_948_c_22 Rep_948_c_22_40 42102 42668 - 1.B.6.2.20
NULL(UNKNOWN) Rep_948_c_22 Rep_948_c_22_41 42870 43583 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_948_c_22 Rep_948_c_22_42 44018 44797 + Ubie_methyltran | TehB | MTS | PrmA | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC Rep_948_c_22 Rep_948_c_22_43 44819 46396 + 3.A.1.5.3
TC Rep_948_c_22 Rep_948_c_22_44 46459 47385 + 3.A.1.5.3
TC Rep_948_c_22 Rep_948_c_22_45 47388 48257 + 3.A.1.5.43
TC Rep_948_c_22 Rep_948_c_22_46 48235 49044 + 3.A.1.5.43
TC Rep_948_c_22 Rep_948_c_22_47 49081 49833 + 3.A.1.5.43
Gene ID: Rep_948_c_22_25
Type: TC
Location: 26074 - 26715 (-)
Gene ID: Rep_948_c_22_26
Type: TC
Location: 26712 - 29129 (-)
Gene ID: Rep_948_c_22_27
Type: TF
Location: 29506 - 30276 (+)
Gene ID: Rep_948_c_22_28
Type: TC
Location: 30301 - 31800 (-)
Gene ID: Rep_948_c_22_29
Type: STP
Location: 31892 - 32443 (+)
Gene ID: Rep_948_c_22_30
Type: TC
Location: 32505 - 33260 (-)
Gene ID: Rep_948_c_22_31
Type: pfam
Location: 33262 - 34269 (-)
Gene ID: Rep_948_c_22_32
Type: TC
Location: 34256 - 35218 (-)
Gene ID: Rep_948_c_22_33
Type: STP
Location: 35228 - 36187 (-)
Gene ID: Rep_948_c_22_34
Type: TC
Location: 36641 - 36967 (+)
Gene ID: Rep_948_c_22_35
Type: TC
Location: 37057 - 38415 (+)
Gene ID: Rep_948_c_22_36
Type: TC
Location: 38477 - 38824 (+)
Gene ID: Rep_948_c_22_37
Type: TF
Location: 38833 - 39681 (+)
Gene ID: Rep_948_c_22_38
Type: CAZyme
Location: 39842 - 41194 (+)
Gene ID: Rep_948_c_22_39
Type: pfam
Location: 41232 - 41993 (+)
Gene ID: Rep_948_c_22_40
Type: TC
Location: 42102 - 42668 (-)
Gene ID: Rep_948_c_22_41
Type:
Location: 42870 - 43583 (-)
Gene ID: Rep_948_c_22_42
Type: pfam
Location: 44018 - 44797 (+)
Gene ID: Rep_948_c_22_43
Type: TC
Location: 44819 - 46396 (+)
Gene ID: Rep_948_c_22_44
Type: TC
Location: 46459 - 47385 (+)
Gene ID: Rep_948_c_22_45
Type: TC
Location: 47388 - 48257 (+)
Gene ID: Rep_948_c_22_46
Type: TC
Location: 48235 - 49044 (+)
Gene ID: Rep_948_c_22_47
Type: TC
Location: 49081 - 49833 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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