Cluster: Rep_947_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_947
- CGC Family ID: CGCFAM_00293
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_947_c_60 | Rep_947_c_60_7 | 4397 | 6439 | - | 2.A.15.1.4 |
| STP | Rep_947_c_60 | Rep_947_c_60_8 | 6625 | 7251 | + | TetR_N |
| sulfatase | Rep_947_c_60 | Rep_947_c_60_9 | 7274 | 8752 | + | S1_6 |
| CAZyme | Rep_947_c_60 | Rep_947_c_60_10 | 8792 | 10471 | + | AA3_2 |
| pfam | Rep_947_c_60 | Rep_947_c_60_11 | 10809 | 11156 | - | CutA1 |
| TC | Rep_947_c_60 | Rep_947_c_60_12 | 11792 | 13264 | + | 2.A.47.3.1 |
Gene ID: Rep_947_c_60_7
Type: TC
Location: 4397 - 6439 (-)
Type: TC
Location: 4397 - 6439 (-)
Gene ID: Rep_947_c_60_8
Type: STP
Location: 6625 - 7251 (+)
Type: STP
Location: 6625 - 7251 (+)
Gene ID: Rep_947_c_60_9
Type: sulfatase
Location: 7274 - 8752 (+)
Type: sulfatase
Location: 7274 - 8752 (+)
Gene ID: Rep_947_c_60_10
Type: CAZyme
Location: 8792 - 10471 (+)
Type: CAZyme
Location: 8792 - 10471 (+)
Gene ID: Rep_947_c_60_11
Type: pfam
Location: 10809 - 11156 (-)
Type: pfam
Location: 10809 - 11156 (-)
Gene ID: Rep_947_c_60_12
Type: TC
Location: 11792 - 13264 (+)
Type: TC
Location: 11792 - 13264 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.