Cluster: Rep_947_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_947
- CGC Family ID: CGCFAM_00040
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_947_c_52 | Rep_947_c_52_3 | 1489 | 2289 | - | GT2 |
| NULL(UNKNOWN) | Rep_947_c_52 | Rep_947_c_52_4 | 2291 | 3112 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_947_c_52 | Rep_947_c_52_5 | 3116 | 4213 | - | GT4 |
| TC | Rep_947_c_52 | Rep_947_c_52_6 | 4255 | 5496 | - | 2.A.66.2.16 |
| pfam | Rep_947_c_52 | Rep_947_c_52_7 | 5483 | 6598 | - | AlaDh_PNT_C |
| NULL(UNKNOWN) | Rep_947_c_52 | Rep_947_c_52_8 | 6591 | 7598 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_947_c_52 | Rep_947_c_52_9 | 8298 | 9734 | - | 1.B.73.1.1 |
Gene ID: Rep_947_c_52_3
Type: CAZyme
Location: 1489 - 2289 (-)
Type: CAZyme
Location: 1489 - 2289 (-)
Gene ID: Rep_947_c_52_4
Type:
Location: 2291 - 3112 (-)
Type:
Location: 2291 - 3112 (-)
Gene ID: Rep_947_c_52_5
Type: CAZyme
Location: 3116 - 4213 (-)
Type: CAZyme
Location: 3116 - 4213 (-)
Gene ID: Rep_947_c_52_6
Type: TC
Location: 4255 - 5496 (-)
Type: TC
Location: 4255 - 5496 (-)
Gene ID: Rep_947_c_52_7
Type: pfam
Location: 5483 - 6598 (-)
Type: pfam
Location: 5483 - 6598 (-)
Gene ID: Rep_947_c_52_8
Type:
Location: 6591 - 7598 (-)
Type:
Location: 6591 - 7598 (-)
Gene ID: Rep_947_c_52_9
Type: TC
Location: 8298 - 9734 (-)
Type: TC
Location: 8298 - 9734 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.