Cluster: Rep_947_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: Rep_947
- CGC Family ID: CGCFAM_00726
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_947_c_45 | Rep_947_c_45_12 | 11911 | 13266 | - | 2.A.23.1.3 |
| NULL(UNKNOWN) | Rep_947_c_45 | Rep_947_c_45_13 | 13798 | 13941 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_947_c_45 | Rep_947_c_45_14 | 14670 | 15893 | - | MarR |
| CAZyme | Rep_947_c_45 | Rep_947_c_45_15 | 15905 | 17068 | - | CE9 |
| sulfatase | Rep_947_c_45 | Rep_947_c_45_16 | 17144 | 17947 | - | S1_9 |
| TC | Rep_947_c_45 | Rep_947_c_45_17 | 18407 | 20392 | + | 4.A.1.1.2 |
| TC | Rep_947_c_45 | Rep_947_c_45_18 | 20641 | 20895 | + | 8.B.24.4.1 |
Gene ID: Rep_947_c_45_12
Type: TC
Location: 11911 - 13266 (-)
Type: TC
Location: 11911 - 13266 (-)
Gene ID: Rep_947_c_45_13
Type:
Location: 13798 - 13941 (+)
Type:
Location: 13798 - 13941 (+)
Gene ID: Rep_947_c_45_14
Type: TF
Location: 14670 - 15893 (-)
Type: TF
Location: 14670 - 15893 (-)
Gene ID: Rep_947_c_45_15
Type: CAZyme
Location: 15905 - 17068 (-)
Type: CAZyme
Location: 15905 - 17068 (-)
Gene ID: Rep_947_c_45_16
Type: sulfatase
Location: 17144 - 17947 (-)
Type: sulfatase
Location: 17144 - 17947 (-)
Gene ID: Rep_947_c_45_17
Type: TC
Location: 18407 - 20392 (+)
Type: TC
Location: 18407 - 20392 (+)
Gene ID: Rep_947_c_45_18
Type: TC
Location: 20641 - 20895 (+)
Type: TC
Location: 20641 - 20895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.