Cluster: Rep_947_CGC24
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_947
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_947_c_39 | Rep_947_c_39_30 | 31866 | 32186 | + | 4.A.3.2.1 |
| TC | Rep_947_c_39 | Rep_947_c_39_31 | 32301 | 33659 | + | 4.A.3.2.7 |
| TC | Rep_947_c_39 | Rep_947_c_39_32 | 33704 | 34051 | + | 4.A.3.2.1 |
| TF | Rep_947_c_39 | Rep_947_c_39_33 | 34062 | 34928 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_947_c_39 | Rep_947_c_39_34 | 35039 | 36397 | + | GH4 |
Gene ID: Rep_947_c_39_30
Type: TC
Location: 31866 - 32186 (+)
Type: TC
Location: 31866 - 32186 (+)
Gene ID: Rep_947_c_39_31
Type: TC
Location: 32301 - 33659 (+)
Type: TC
Location: 32301 - 33659 (+)
Gene ID: Rep_947_c_39_32
Type: TC
Location: 33704 - 34051 (+)
Type: TC
Location: 33704 - 34051 (+)
Gene ID: Rep_947_c_39_33
Type: TF
Location: 34062 - 34928 (+)
Type: TF
Location: 34062 - 34928 (+)
Gene ID: Rep_947_c_39_34
Type: CAZyme
Location: 35039 - 36397 (+)
Type: CAZyme
Location: 35039 - 36397 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.