Cluster: Rep_947_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_947
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_947_c_18 | Rep_947_c_18_11 | 11307 | 12380 | - | GT28 |
| TC | Rep_947_c_18 | Rep_947_c_18_12 | 12377 | 13570 | - | 2.A.103.1.1 |
| pfam | Rep_947_c_18 | Rep_947_c_18_13 | 13570 | 14880 | - | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | Rep_947_c_18 | Rep_947_c_18_14 | 14882 | 15964 | - | 9.B.146.1.6 |
Gene ID: Rep_947_c_18_11
Type: CAZyme
Location: 11307 - 12380 (-)
Type: CAZyme
Location: 11307 - 12380 (-)
Gene ID: Rep_947_c_18_12
Type: TC
Location: 12377 - 13570 (-)
Type: TC
Location: 12377 - 13570 (-)
Gene ID: Rep_947_c_18_13
Type: pfam
Location: 13570 - 14880 (-)
Type: pfam
Location: 13570 - 14880 (-)
Gene ID: Rep_947_c_18_14
Type: TC
Location: 14882 - 15964 (-)
Type: TC
Location: 14882 - 15964 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.