Cluster: Rep_947_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_947
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_947_c_18 | Rep_947_c_18_2 | 562 | 3273 | - | 3.A.5.1.1 |
| pfam | Rep_947_c_18 | Rep_947_c_18_3 | 3370 | 3957 | - | SecM |
| pfam | Rep_947_c_18 | Rep_947_c_18_4 | 3976 | 4497 | + | DciA |
| CAZyme | Rep_947_c_18 | Rep_947_c_18_5 | 4536 | 5453 | - | CE11 |
Gene ID: Rep_947_c_18_2
Type: TC
Location: 562 - 3273 (-)
Type: TC
Location: 562 - 3273 (-)
Gene ID: Rep_947_c_18_3
Type: pfam
Location: 3370 - 3957 (-)
Type: pfam
Location: 3370 - 3957 (-)
Gene ID: Rep_947_c_18_4
Type: pfam
Location: 3976 - 4497 (+)
Type: pfam
Location: 3976 - 4497 (+)
Gene ID: Rep_947_c_18_5
Type: CAZyme
Location: 4536 - 5453 (-)
Type: CAZyme
Location: 4536 - 5453 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.