Cluster: Rep_947_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_947
- CGC Family ID: CGCFAM_00432
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_947_c_9 | Rep_947_c_9_1 | 96 | 1421 | + | 1.C.1.3.2 |
| TC | Rep_947_c_9 | Rep_947_c_9_2 | 1448 | 1981 | - | 8.B.24.1.3 |
| pfam | Rep_947_c_9 | Rep_947_c_9_3 | 2183 | 3118 | - | Flagellin_N |
| pfam | Rep_947_c_9 | Rep_947_c_9_4 | 3147 | 4790 | - | Flg_bbr_C | flgK_1st_1 | FlgK_D1 |
| CAZyme | Rep_947_c_9 | Rep_947_c_9_5 | 4932 | 5912 | - | GH73 |
Gene ID: Rep_947_c_9_1
Type: TC
Location: 96 - 1421 (+)
Type: TC
Location: 96 - 1421 (+)
Gene ID: Rep_947_c_9_2
Type: TC
Location: 1448 - 1981 (-)
Type: TC
Location: 1448 - 1981 (-)
Gene ID: Rep_947_c_9_3
Type: pfam
Location: 2183 - 3118 (-)
Type: pfam
Location: 2183 - 3118 (-)
Gene ID: Rep_947_c_9_4
Type: pfam
Location: 3147 - 4790 (-)
Type: pfam
Location: 3147 - 4790 (-)
Gene ID: Rep_947_c_9_5
Type: CAZyme
Location: 4932 - 5912 (-)
Type: CAZyme
Location: 4932 - 5912 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Providencia
Species
Providencia rettgeri_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.