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Cluster: Rep_946_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_946_c_7 Rep_946_c_7_8 4128 5681 - 2.A.1.3.18
TC Rep_946_c_7 Rep_946_c_7_9 5681 6733 - 8.A.1.1.2
TF Rep_946_c_7 Rep_946_c_7_10 6830 7732 + HTH_1
pfam Rep_946_c_7 Rep_946_c_7_11 7742 8056 + DUF2007
TC Rep_946_c_7 Rep_946_c_7_12 8068 9351 - 2.A.23.1.5
pfam Rep_946_c_7 Rep_946_c_7_13 9561 9806 + DUF2492
TC Rep_946_c_7 Rep_946_c_7_14 9906 10505 + 2.A.95.1.5
TF Rep_946_c_7 Rep_946_c_7_15 10582 11550 - HTH_1
TC Rep_946_c_7 Rep_946_c_7_16 11827 11988 + 2.A.64.1.1
pfam Rep_946_c_7 Rep_946_c_7_17 12005 12307 + DUF406
CAZyme Rep_946_c_7 Rep_946_c_7_18 12537 13958 + GH23
Gene ID: Rep_946_c_7_8
Type: TC
Location: 4128 - 5681 (-)
Gene ID: Rep_946_c_7_9
Type: TC
Location: 5681 - 6733 (-)
Gene ID: Rep_946_c_7_10
Type: TF
Location: 6830 - 7732 (+)
Gene ID: Rep_946_c_7_11
Type: pfam
Location: 7742 - 8056 (+)
Gene ID: Rep_946_c_7_12
Type: TC
Location: 8068 - 9351 (-)
Gene ID: Rep_946_c_7_13
Type: pfam
Location: 9561 - 9806 (+)
Gene ID: Rep_946_c_7_14
Type: TC
Location: 9906 - 10505 (+)
Gene ID: Rep_946_c_7_15
Type: TF
Location: 10582 - 11550 (-)
Gene ID: Rep_946_c_7_16
Type: TC
Location: 11827 - 11988 (+)
Gene ID: Rep_946_c_7_17
Type: pfam
Location: 12005 - 12307 (+)
Gene ID: Rep_946_c_7_18
Type: CAZyme
Location: 12537 - 13958 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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