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Cluster: Rep_946_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_946_c_5 Rep_946_c_5_20 19292 20554 - 9.B.20.3.3
TC Rep_946_c_5 Rep_946_c_5_21 20772 21773 + 3.A.1.6.1
pfam Rep_946_c_5 Rep_946_c_5_22 21830 22405 + Ser_hydrolase | Abhydrolase_6
TC Rep_946_c_5 Rep_946_c_5_23 22677 23516 + 3.A.1.6.1
TC Rep_946_c_5 Rep_946_c_5_24 23513 24403 + 3.A.1.6.1
TC Rep_946_c_5 Rep_946_c_5_25 24426 25493 + 3.A.1.6.1
TF Rep_946_c_5 Rep_946_c_5_26 25616 26563 + HTH_1
CAZyme Rep_946_c_5 Rep_946_c_5_27 26622 28043 - AA10 | CBM73
Gene ID: Rep_946_c_5_20
Type: TC
Location: 19292 - 20554 (-)
Gene ID: Rep_946_c_5_21
Type: TC
Location: 20772 - 21773 (+)
Gene ID: Rep_946_c_5_22
Type: pfam
Location: 21830 - 22405 (+)
Gene ID: Rep_946_c_5_23
Type: TC
Location: 22677 - 23516 (+)
Gene ID: Rep_946_c_5_24
Type: TC
Location: 23513 - 24403 (+)
Gene ID: Rep_946_c_5_25
Type: TC
Location: 24426 - 25493 (+)
Gene ID: Rep_946_c_5_26
Type: TF
Location: 25616 - 26563 (+)
Gene ID: Rep_946_c_5_27
Type: CAZyme
Location: 26622 - 28043 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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