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Cluster: Rep_945_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_945_c_126 Rep_945_c_126_3 840 2393 - 1.B.52.2.1
CAZyme Rep_945_c_126 Rep_945_c_126_4 2586 4442 - GH20
pfam Rep_945_c_126 Rep_945_c_126_5 4510 5382 - BcrAD_BadFG
CAZyme Rep_945_c_126 Rep_945_c_126_6 5487 7214 - GH9
TC Rep_945_c_126 Rep_945_c_126_7 7322 8320 - 3.A.1.5.20
TC Rep_945_c_126 Rep_945_c_126_8 8332 9354 - 3.A.1.5.15
TC Rep_945_c_126 Rep_945_c_126_9 9351 10256 - 3.A.1.5.14
TC Rep_945_c_126 Rep_945_c_126_10 10258 11241 - 3.A.1.5.16
TC Rep_945_c_126 Rep_945_c_126_11 11359 13041 - 3.A.1.5.6
Gene ID: Rep_945_c_126_3
Type: TC
Location: 840 - 2393 (-)
Gene ID: Rep_945_c_126_4
Type: CAZyme
Location: 2586 - 4442 (-)
Gene ID: Rep_945_c_126_5
Type: pfam
Location: 4510 - 5382 (-)
Gene ID: Rep_945_c_126_6
Type: CAZyme
Location: 5487 - 7214 (-)
Gene ID: Rep_945_c_126_7
Type: TC
Location: 7322 - 8320 (-)
Gene ID: Rep_945_c_126_8
Type: TC
Location: 8332 - 9354 (-)
Gene ID: Rep_945_c_126_9
Type: TC
Location: 9351 - 10256 (-)
Gene ID: Rep_945_c_126_10
Type: TC
Location: 10258 - 11241 (-)
Gene ID: Rep_945_c_126_11
Type: TC
Location: 11359 - 13041 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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