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Cluster: Rep_945_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_945_c_83 Rep_945_c_83_44 44211 45212 - 3.A.1.5.34
TC Rep_945_c_83 Rep_945_c_83_45 45307 46344 - 3.A.1.5.37
TC Rep_945_c_83 Rep_945_c_83_46 46370 48187 - 3.A.1.5.16
TC Rep_945_c_83 Rep_945_c_83_47 48270 49313 - 3.A.1.5.21
NULL(UNKNOWN) Rep_945_c_83 Rep_945_c_83_48 49316 49417 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_945_c_83 Rep_945_c_83_49 49420 50445 - 3.A.1.5.21
TC Rep_945_c_83 Rep_945_c_83_50 51185 53791 + 1.B.14.6.11
pfam Rep_945_c_83 Rep_945_c_83_51 53894 54658 + DUF3450
TC Rep_945_c_83 Rep_945_c_83_52 54655 56028 + 1.A.30.3.3
pfam Rep_945_c_83 Rep_945_c_83_53 56039 56566 + MotA_ExbB
TC Rep_945_c_83 Rep_945_c_83_54 56633 57040 + 1.A.30.2.5
pfam Rep_945_c_83 Rep_945_c_83_55 57057 57692 + TonB_C
pfam Rep_945_c_83 Rep_945_c_83_56 57704 58939 + TPR_8 | TPR_16
CAZyme Rep_945_c_83 Rep_945_c_83_57 59280 62318 - CBM73 | GH18
Gene ID: Rep_945_c_83_44
Type: TC
Location: 44211 - 45212 (-)
Gene ID: Rep_945_c_83_45
Type: TC
Location: 45307 - 46344 (-)
Gene ID: Rep_945_c_83_46
Type: TC
Location: 46370 - 48187 (-)
Gene ID: Rep_945_c_83_47
Type: TC
Location: 48270 - 49313 (-)
Gene ID: Rep_945_c_83_48
Type:
Location: 49316 - 49417 (-)
Gene ID: Rep_945_c_83_49
Type: TC
Location: 49420 - 50445 (-)
Gene ID: Rep_945_c_83_50
Type: TC
Location: 51185 - 53791 (+)
Gene ID: Rep_945_c_83_51
Type: pfam
Location: 53894 - 54658 (+)
Gene ID: Rep_945_c_83_52
Type: TC
Location: 54655 - 56028 (+)
Gene ID: Rep_945_c_83_53
Type: pfam
Location: 56039 - 56566 (+)
Gene ID: Rep_945_c_83_54
Type: TC
Location: 56633 - 57040 (+)
Gene ID: Rep_945_c_83_55
Type: pfam
Location: 57057 - 57692 (+)
Gene ID: Rep_945_c_83_56
Type: pfam
Location: 57704 - 58939 (+)
Gene ID: Rep_945_c_83_57
Type: CAZyme
Location: 59280 - 62318 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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