dbCAN Logo

Cluster: Rep_945_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_945_c_55 Rep_945_c_55_11 16091 17665 + 2.A.34.1.1
TC Rep_945_c_55 Rep_945_c_55_12 17752 18273 + 5.A.2.1.1
TC Rep_945_c_55 Rep_945_c_55_13 18520 19182 - 9.B.27.2.3
TC Rep_945_c_55 Rep_945_c_55_14 19330 19587 - 9.B.143.3.6
pfam Rep_945_c_55 Rep_945_c_55_15 19584 21596 - Helicase_C | UVR | ResIII | UvrB | UvrB_inter
NULL(UNKNOWN) Rep_945_c_55 Rep_945_c_55_16 22295 22390 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_945_c_55 Rep_945_c_55_17 22576 24261 + 2.A.81.1.4
CAZyme Rep_945_c_55 Rep_945_c_55_18 24440 25972 + GH23
pfam Rep_945_c_55 Rep_945_c_55_19 26144 27109 + TctC
pfam Rep_945_c_55 Rep_945_c_55_20 27167 27628 + TctB
TC Rep_945_c_55 Rep_945_c_55_21 27638 29167 + 2.A.80.1.1
Gene ID: Rep_945_c_55_11
Type: TC
Location: 16091 - 17665 (+)
Gene ID: Rep_945_c_55_12
Type: TC
Location: 17752 - 18273 (+)
Gene ID: Rep_945_c_55_13
Type: TC
Location: 18520 - 19182 (-)
Gene ID: Rep_945_c_55_14
Type: TC
Location: 19330 - 19587 (-)
Gene ID: Rep_945_c_55_15
Type: pfam
Location: 19584 - 21596 (-)
Gene ID: Rep_945_c_55_16
Type:
Location: 22295 - 22390 (-)
Gene ID: Rep_945_c_55_17
Type: TC
Location: 22576 - 24261 (+)
Gene ID: Rep_945_c_55_18
Type: CAZyme
Location: 24440 - 25972 (+)
Gene ID: Rep_945_c_55_19
Type: pfam
Location: 26144 - 27109 (+)
Gene ID: Rep_945_c_55_20
Type: pfam
Location: 27167 - 27628 (+)
Gene ID: Rep_945_c_55_21
Type: TC
Location: 27638 - 29167 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List