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Cluster: Rep_945_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_945_c_45 Rep_945_c_45_1 198 1568 + 4.A.1.2.3
CAZyme Rep_945_c_45 Rep_945_c_45_2 1600 2130 + GH1
CAZyme Rep_945_c_45 Rep_945_c_45_3 2188 3030 + GH1
STP Rep_945_c_45 Rep_945_c_45_4 3120 4640 - Pribosyltran
TC Rep_945_c_45 Rep_945_c_45_5 4659 5150 - 9.B.160.1.8
pfam Rep_945_c_45 Rep_945_c_45_6 5326 6621 - tRNA-synt_2b | Seryl_tRNA_N
STP Rep_945_c_45 Rep_945_c_45_7 6902 8233 - AAA
TC Rep_945_c_45 Rep_945_c_45_8 8307 8927 - 1.B.46.1.2
TC Rep_945_c_45 Rep_945_c_45_9 8993 11497 - 3.A.12.1.2
Gene ID: Rep_945_c_45_1
Type: TC
Location: 198 - 1568 (+)
Gene ID: Rep_945_c_45_2
Type: CAZyme
Location: 1600 - 2130 (+)
Gene ID: Rep_945_c_45_3
Type: CAZyme
Location: 2188 - 3030 (+)
Gene ID: Rep_945_c_45_4
Type: STP
Location: 3120 - 4640 (-)
Gene ID: Rep_945_c_45_5
Type: TC
Location: 4659 - 5150 (-)
Gene ID: Rep_945_c_45_6
Type: pfam
Location: 5326 - 6621 (-)
Gene ID: Rep_945_c_45_7
Type: STP
Location: 6902 - 8233 (-)
Gene ID: Rep_945_c_45_8
Type: TC
Location: 8307 - 8927 (-)
Gene ID: Rep_945_c_45_9
Type: TC
Location: 8993 - 11497 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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