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Cluster: Rep_945_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_945_c_39 Rep_945_c_39_1 19 375 - 3.A.1.122.12
pfam Rep_945_c_39 Rep_945_c_39_2 570 1010 - Usp
pfam Rep_945_c_39 Rep_945_c_39_3 1482 3146 - SMC_N | AAA_23
TC Rep_945_c_39 Rep_945_c_39_4 3452 4609 + 9.B.34.1.4
pfam Rep_945_c_39 Rep_945_c_39_5 4634 5518 - NAD_kinase | NAD_kinase_C
pfam Rep_945_c_39 Rep_945_c_39_6 5782 6357 + GrpE
TC Rep_945_c_39 Rep_945_c_39_7 6641 8569 + 1.A.33.1.2
pfam Rep_945_c_39 Rep_945_c_39_8 8824 9960 + DnaJ | DnaJ_CXXCXGXG | DnaJ_C
TC Rep_945_c_39 Rep_945_c_39_9 10231 11715 + 1.B.3.1.2
STP Rep_945_c_39 Rep_945_c_39_10 11851 12786 + PfkB
TC Rep_945_c_39 Rep_945_c_39_11 12870 14234 + 4.A.1.2.1
CAZyme Rep_945_c_39 Rep_945_c_39_12 14234 15649 + GH32
Gene ID: Rep_945_c_39_1
Type: TC
Location: 19 - 375 (-)
Gene ID: Rep_945_c_39_2
Type: pfam
Location: 570 - 1010 (-)
Gene ID: Rep_945_c_39_3
Type: pfam
Location: 1482 - 3146 (-)
Gene ID: Rep_945_c_39_4
Type: TC
Location: 3452 - 4609 (+)
Gene ID: Rep_945_c_39_5
Type: pfam
Location: 4634 - 5518 (-)
Gene ID: Rep_945_c_39_6
Type: pfam
Location: 5782 - 6357 (+)
Gene ID: Rep_945_c_39_7
Type: TC
Location: 6641 - 8569 (+)
Gene ID: Rep_945_c_39_8
Type: pfam
Location: 8824 - 9960 (+)
Gene ID: Rep_945_c_39_9
Type: TC
Location: 10231 - 11715 (+)
Gene ID: Rep_945_c_39_10
Type: STP
Location: 11851 - 12786 (+)
Gene ID: Rep_945_c_39_11
Type: TC
Location: 12870 - 14234 (+)
Gene ID: Rep_945_c_39_12
Type: CAZyme
Location: 14234 - 15649 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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