Cluster: Rep_927_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_3 | Rep_927_c_3_119 | 115847 | 116338 | - | 9.B.105.1.1 |
| pfam | Rep_927_c_3 | Rep_927_c_3_120 | 116455 | 117825 | - | Hexapep | Hexapep | NTP_transferase | IspD | CTP_transf_3 | NTP_transf_3 | Hexapep_2 | Hexapep_2 |
| peptidase | Rep_927_c_3 | Rep_927_c_3_121 | 118084 | 119721 | + | C26.964 |
| CAZyme | Rep_927_c_3 | Rep_927_c_3_122 | 119844 | 120779 | + | GT2 |
Gene ID: Rep_927_c_3_119
Type: TC
Location: 115847 - 116338 (-)
Type: TC
Location: 115847 - 116338 (-)
Gene ID: Rep_927_c_3_120
Type: pfam
Location: 116455 - 117825 (-)
Type: pfam
Location: 116455 - 117825 (-)
Gene ID: Rep_927_c_3_121
Type: peptidase
Location: 118084 - 119721 (+)
Type: peptidase
Location: 118084 - 119721 (+)
Gene ID: Rep_927_c_3_122
Type: CAZyme
Location: 119844 - 120779 (+)
Type: CAZyme
Location: 119844 - 120779 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_3_119 | vegan > omnivore | 1.15814 | 0.00918 |
| Rep_927_c_3_119 | vegetarian > omnivore | 1.11230 | 0.01613 |