Cluster: Rep_927_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_3 | Rep_927_c_3_62 | 55295 | 57139 | - | 3.A.1.106.2 |
| TF | Rep_927_c_3 | Rep_927_c_3_63 | 57216 | 58106 | - | HTH_AraC | HTH_AraC |
| pfam | Rep_927_c_3 | Rep_927_c_3_64 | 58210 | 58554 | + | CMD |
| CAZyme | Rep_927_c_3 | Rep_927_c_3_65 | 58626 | 59681 | - | GT9 |
| pfam | Rep_927_c_3 | Rep_927_c_3_66 | 59759 | 60484 | + | RIO1 | APH | Kdo |
| TC | Rep_927_c_3 | Rep_927_c_3_67 | 60529 | 62358 | - | 2.A.37.1.10 |
Gene ID: Rep_927_c_3_62
Type: TC
Location: 55295 - 57139 (-)
Type: TC
Location: 55295 - 57139 (-)
Gene ID: Rep_927_c_3_63
Type: TF
Location: 57216 - 58106 (-)
Type: TF
Location: 57216 - 58106 (-)
Gene ID: Rep_927_c_3_64
Type: pfam
Location: 58210 - 58554 (+)
Type: pfam
Location: 58210 - 58554 (+)
Gene ID: Rep_927_c_3_65
Type: CAZyme
Location: 58626 - 59681 (-)
Type: CAZyme
Location: 58626 - 59681 (-)
Gene ID: Rep_927_c_3_66
Type: pfam
Location: 59759 - 60484 (+)
Type: pfam
Location: 59759 - 60484 (+)
Gene ID: Rep_927_c_3_67
Type: TC
Location: 60529 - 62358 (-)
Type: TC
Location: 60529 - 62358 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_3_63 | vegetarian > vegan | 1.24091 | 0.03566 |
| Rep_927_c_3_64 | vegan > omnivore | 1.23434 | 0.00918 |
| Rep_927_c_3_64 | vegetarian > omnivore | 1.53200 | 0.01613 |
| Rep_927_c_3_65 | vegetarian > omnivore | 1.02494 | 0.01613 |
| Rep_927_c_3_65 | vegetarian > vegan | 1.25910 | 0.03566 |