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Cluster: Rep_927_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_927_c_2 Rep_927_c_2_119 120810 121853 + GH3
pfam Rep_927_c_2 Rep_927_c_2_120 121850 123022 + MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31
TC Rep_927_c_2 Rep_927_c_2_121 123056 123889 - 3.A.1.15.4
TC Rep_927_c_2 Rep_927_c_2_122 123882 124733 - 3.A.1.15.4
TC Rep_927_c_2 Rep_927_c_2_123 124737 125633 - 3.A.1.15.4
TC Rep_927_c_2 Rep_927_c_2_124 125633 126514 - 3.A.1.15.4
Gene ID: Rep_927_c_2_119
Type: CAZyme
Location: 120810 - 121853 (+)
Gene ID: Rep_927_c_2_120
Type: pfam
Location: 121850 - 123022 (+)
Gene ID: Rep_927_c_2_121
Type: TC
Location: 123056 - 123889 (-)
Gene ID: Rep_927_c_2_122
Type: TC
Location: 123882 - 124733 (-)
Gene ID: Rep_927_c_2_123
Type: TC
Location: 124737 - 125633 (-)
Gene ID: Rep_927_c_2_124
Type: TC
Location: 125633 - 126514 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_927_c_2_120 vegetarian > omnivore 1.05023 0.01613
Rep_927_c_2_121 vegan > omnivore 2.15040 0.00918
Rep_927_c_2_121 vegetarian > omnivore 1.31529 0.01613
Rep_927_c_2_122 vegan > omnivore 2.29744 0.00918
Rep_927_c_2_122 vegetarian > omnivore 1.74623 0.01613

🧭 Explore Read Mapping of CGC

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