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Cluster: Rep_927_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_927_c_1 Rep_927_c_1_143 148839 151088 - 1.B.14.1.5
TC Rep_927_c_1 Rep_927_c_1_144 151330 152037 + 2.A.88.8.6
TC Rep_927_c_1 Rep_927_c_1_145 152052 153368 + 2.A.1.15.11
peptidase Rep_927_c_1 Rep_927_c_1_146 153591 154418 + C44.UPW
STP Rep_927_c_1 Rep_927_c_1_147 154487 155857 - Pyr_redox_2
CAZyme Rep_927_c_1 Rep_927_c_1_148 156076 157203 + GT2
CAZyme Rep_927_c_1 Rep_927_c_1_149 157237 158211 + GT2
CAZyme Rep_927_c_1 Rep_927_c_1_150 158233 159069 - GT8
TC Rep_927_c_1 Rep_927_c_1_151 159225 164891 - 1.B.40.1.5
Gene ID: Rep_927_c_1_143
Type: TC
Location: 148839 - 151088 (-)
Gene ID: Rep_927_c_1_144
Type: TC
Location: 151330 - 152037 (+)
Gene ID: Rep_927_c_1_145
Type: TC
Location: 152052 - 153368 (+)
Gene ID: Rep_927_c_1_146
Type: peptidase
Location: 153591 - 154418 (+)
Gene ID: Rep_927_c_1_147
Type: STP
Location: 154487 - 155857 (-)
Gene ID: Rep_927_c_1_148
Type: CAZyme
Location: 156076 - 157203 (+)
Gene ID: Rep_927_c_1_149
Type: CAZyme
Location: 157237 - 158211 (+)
Gene ID: Rep_927_c_1_150
Type: CAZyme
Location: 158233 - 159069 (-)
Gene ID: Rep_927_c_1_151
Type: TC
Location: 159225 - 164891 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_927_c_1_146 vegan > omnivore 1.59474 0.00918
Rep_927_c_1_146 vegetarian > omnivore 1.00854 0.01613

🧭 Explore Read Mapping of CGC

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