Cluster: Rep_927_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_927_c_17 | Rep_927_c_17_4 | 3074 | 3889 | + | GT2 |
| TC | Rep_927_c_17 | Rep_927_c_17_5 | 3886 | 5262 | + | 2.A.38.1.1 |
| TC | Rep_927_c_17 | Rep_927_c_17_6 | 5341 | 5727 | + | 1.A.22.1.1 |
Gene ID: Rep_927_c_17_4
Type: CAZyme
Location: 3074 - 3889 (+)
Type: CAZyme
Location: 3074 - 3889 (+)
Gene ID: Rep_927_c_17_5
Type: TC
Location: 3886 - 5262 (+)
Type: TC
Location: 3886 - 5262 (+)
Gene ID: Rep_927_c_17_6
Type: TC
Location: 5341 - 5727 (+)
Type: TC
Location: 5341 - 5727 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_17_4 | vegan > omnivore | 1.60641 | 0.00918 |
| Rep_927_c_17_4 | vegetarian > omnivore | 1.08220 | 0.01613 |
| Rep_927_c_17_5 | vegetarian > omnivore | 1.28880 | 0.01077 |
| Rep_927_c_17_6 | vegan > omnivore | 1.66459 | 0.00918 |
| Rep_927_c_17_6 | vegetarian > omnivore | 2.89727 | 0.01613 |