Cluster: Rep_927_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_14 | Rep_927_c_14_8 | 7827 | 8582 | - | 9.B.20.2.2 |
| pfam | Rep_927_c_14 | Rep_927_c_14_9 | 8711 | 10048 | + | UPF0004 | Radical_SAM | TRAM_2 |
| CAZyme | Rep_927_c_14 | Rep_927_c_14_10 | 10088 | 12106 | + | GT41 |
Gene ID: Rep_927_c_14_8
Type: TC
Location: 7827 - 8582 (-)
Type: TC
Location: 7827 - 8582 (-)
Gene ID: Rep_927_c_14_9
Type: pfam
Location: 8711 - 10048 (+)
Type: pfam
Location: 8711 - 10048 (+)
Gene ID: Rep_927_c_14_10
Type: CAZyme
Location: 10088 - 12106 (+)
Type: CAZyme
Location: 10088 - 12106 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_14_8 | vegetarian > omnivore | 1.08735 | 0.01613 |