Cluster: Rep_927_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_13 | Rep_927_c_13_25 | 23065 | 24915 | + | 3.A.18.1.1 |
| CAZyme | Rep_927_c_13 | Rep_927_c_13_26 | 25011 | 26405 | + | GH23 |
| NULL(UNKNOWN) | Rep_927_c_13 | Rep_927_c_13_27 | 26461 | 26604 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_927_c_13 | Rep_927_c_13_28 | 26657 | 26974 | - | Ribosomal_S30AE |
| TC | Rep_927_c_13 | Rep_927_c_13_29 | 27217 | 28587 | - | 2.A.25.1.4 |
Gene ID: Rep_927_c_13_25
Type: TC
Location: 23065 - 24915 (+)
Type: TC
Location: 23065 - 24915 (+)
Gene ID: Rep_927_c_13_26
Type: CAZyme
Location: 25011 - 26405 (+)
Type: CAZyme
Location: 25011 - 26405 (+)
Gene ID: Rep_927_c_13_27
Type:
Location: 26461 - 26604 (+)
Type:
Location: 26461 - 26604 (+)
Gene ID: Rep_927_c_13_28
Type: pfam
Location: 26657 - 26974 (-)
Type: pfam
Location: 26657 - 26974 (-)
Gene ID: Rep_927_c_13_29
Type: TC
Location: 27217 - 28587 (-)
Type: TC
Location: 27217 - 28587 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_13_26 | vegetarian > omnivore | 1.48959 | 0.01613 |
| Rep_927_c_13_27 | vegetarian > omnivore | 1.55799 | 0.01613 |