Cluster: Rep_927_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_927_c_11 | Rep_927_c_11_27 | 23863 | 25104 | - | GT2 |
| CAZyme | Rep_927_c_11 | Rep_927_c_11_28 | 25114 | 27030 | - | CE4 | GH153 |
| TC | Rep_927_c_11 | Rep_927_c_11_29 | 27052 | 29505 | - | 1.B.55.1.3 |
| TC | Rep_927_c_11 | Rep_927_c_11_30 | 29711 | 30478 | - | 3.A.1.14.8 |
| TC | Rep_927_c_11 | Rep_927_c_11_31 | 30478 | 31461 | - | 3.A.1.14.1 |
| TC | Rep_927_c_11 | Rep_927_c_11_32 | 31461 | 32450 | - | 3.A.1.14.1 |
| TC | Rep_927_c_11 | Rep_927_c_11_33 | 32450 | 33340 | - | 3.A.1.14.1 |
Gene ID: Rep_927_c_11_27
Type: CAZyme
Location: 23863 - 25104 (-)
Type: CAZyme
Location: 23863 - 25104 (-)
Gene ID: Rep_927_c_11_28
Type: CAZyme
Location: 25114 - 27030 (-)
Type: CAZyme
Location: 25114 - 27030 (-)
Gene ID: Rep_927_c_11_29
Type: TC
Location: 27052 - 29505 (-)
Type: TC
Location: 27052 - 29505 (-)
Gene ID: Rep_927_c_11_30
Type: TC
Location: 29711 - 30478 (-)
Type: TC
Location: 29711 - 30478 (-)
Gene ID: Rep_927_c_11_31
Type: TC
Location: 30478 - 31461 (-)
Type: TC
Location: 30478 - 31461 (-)
Gene ID: Rep_927_c_11_32
Type: TC
Location: 31461 - 32450 (-)
Type: TC
Location: 31461 - 32450 (-)
Gene ID: Rep_927_c_11_33
Type: TC
Location: 32450 - 33340 (-)
Type: TC
Location: 32450 - 33340 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_11_32 | vegetarian > omnivore | 1.40529 | 0.01613 |
| Rep_927_c_11_33 | vegetarian > omnivore | 1.42775 | 0.01613 |