Cluster: Rep_927_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_927_c_11 | Rep_927_c_11_19 | 15545 | 16588 | + | GT9 |
| TC | Rep_927_c_11 | Rep_927_c_11_20 | 16585 | 17490 | + | 2.A.7.3.58 |
| CAZyme | Rep_927_c_11 | Rep_927_c_11_21 | 17487 | 18440 | + | GT9 |
| TC | Rep_927_c_11 | Rep_927_c_11_22 | 18606 | 19685 | + | 1.B.1.3.3 |
Gene ID: Rep_927_c_11_19
Type: CAZyme
Location: 15545 - 16588 (+)
Type: CAZyme
Location: 15545 - 16588 (+)
Gene ID: Rep_927_c_11_20
Type: TC
Location: 16585 - 17490 (+)
Type: TC
Location: 16585 - 17490 (+)
Gene ID: Rep_927_c_11_21
Type: CAZyme
Location: 17487 - 18440 (+)
Type: CAZyme
Location: 17487 - 18440 (+)
Gene ID: Rep_927_c_11_22
Type: TC
Location: 18606 - 19685 (+)
Type: TC
Location: 18606 - 19685 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_11_21 | vegan > omnivore | 1.16140 | 0.00918 |
| Rep_927_c_11_21 | vegetarian > omnivore | 1.60046 | 0.01613 |