Cluster: Rep_927_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_10 | Rep_927_c_10_3 | 1964 | 2221 | + | 8.A.8.1.1 |
| TC | Rep_927_c_10 | Rep_927_c_10_4 | 2301 | 4028 | + | 8.A.7.1.1 |
| TC | Rep_927_c_10 | Rep_927_c_10_5 | 4088 | 4588 | + | 4.A.1.1.1 |
| pfam | Rep_927_c_10 | Rep_927_c_10_6 | 4661 | 5860 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | Rep_927_c_10 | Rep_927_c_10_7 | 5982 | 9002 | + | GH2 |
Gene ID: Rep_927_c_10_3
Type: TC
Location: 1964 - 2221 (+)
Type: TC
Location: 1964 - 2221 (+)
Gene ID: Rep_927_c_10_4
Type: TC
Location: 2301 - 4028 (+)
Type: TC
Location: 2301 - 4028 (+)
Gene ID: Rep_927_c_10_5
Type: TC
Location: 4088 - 4588 (+)
Type: TC
Location: 4088 - 4588 (+)
Gene ID: Rep_927_c_10_6
Type: pfam
Location: 4661 - 5860 (+)
Type: pfam
Location: 4661 - 5860 (+)
Gene ID: Rep_927_c_10_7
Type: CAZyme
Location: 5982 - 9002 (+)
Type: CAZyme
Location: 5982 - 9002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_10_3 | vegetarian > omnivore | 1.06913 | 0.01613 |
| Rep_927_c_10_5 | vegan > omnivore | 3.00081 | 0.00918 |
| Rep_927_c_10_5 | vegetarian > omnivore | 2.35881 | 0.01613 |