dbCAN Logo

Cluster: Rep_927_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_927_c_8 Rep_927_c_8_5 4027 5412 - 2.A.47.5.2
NULL(UNKNOWN) Rep_927_c_8 Rep_927_c_8_6 5618 7150 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_927_c_8 Rep_927_c_8_7 7199 8422 - 2.A.1.12.1
TF Rep_927_c_8 Rep_927_c_8_8 8596 9306 + GntR
pfam Rep_927_c_8 Rep_927_c_8_9 9296 10369 + GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
CAZyme Rep_927_c_8 Rep_927_c_8_10 10380 11486 + GH177
pfam Rep_927_c_8 Rep_927_c_8_11 11563 12195 - PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
TC Rep_927_c_8 Rep_927_c_8_12 12262 13908 - 3.A.1.5.27
TC Rep_927_c_8 Rep_927_c_8_13 14042 15451 - 2.A.1.3.51
Gene ID: Rep_927_c_8_5
Type: TC
Location: 4027 - 5412 (-)
Gene ID: Rep_927_c_8_6
Type:
Location: 5618 - 7150 (+)
Gene ID: Rep_927_c_8_7
Type: TC
Location: 7199 - 8422 (-)
Gene ID: Rep_927_c_8_8
Type: TF
Location: 8596 - 9306 (+)
Gene ID: Rep_927_c_8_9
Type: pfam
Location: 9296 - 10369 (+)
Gene ID: Rep_927_c_8_10
Type: CAZyme
Location: 10380 - 11486 (+)
Gene ID: Rep_927_c_8_11
Type: pfam
Location: 11563 - 12195 (-)
Gene ID: Rep_927_c_8_12
Type: TC
Location: 12262 - 13908 (-)
Gene ID: Rep_927_c_8_13
Type: TC
Location: 14042 - 15451 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_927_c_8_12 vegan > omnivore 1.08134 0.00918

🧭 Explore Read Mapping of CGC

← Back to Cluster List