Cluster: Rep_927_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_5 | Rep_927_c_5_27 | 30755 | 32659 | + | 2.A.37.1.2 |
| pfam | Rep_927_c_5 | Rep_927_c_5_28 | 32694 | 34829 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | Rep_927_c_5 | Rep_927_c_5_29 | 34948 | 35928 | - | 3.A.1.15.5 |
| pfam | Rep_927_c_5 | Rep_927_c_5_30 | 36096 | 36857 | - | ThiF |
| CAZyme | Rep_927_c_5 | Rep_927_c_5_31 | 36857 | 37984 | - | GH102 |
Gene ID: Rep_927_c_5_27
Type: TC
Location: 30755 - 32659 (+)
Type: TC
Location: 30755 - 32659 (+)
Gene ID: Rep_927_c_5_28
Type: pfam
Location: 32694 - 34829 (-)
Type: pfam
Location: 32694 - 34829 (-)
Gene ID: Rep_927_c_5_29
Type: TC
Location: 34948 - 35928 (-)
Type: TC
Location: 34948 - 35928 (-)
Gene ID: Rep_927_c_5_30
Type: pfam
Location: 36096 - 36857 (-)
Type: pfam
Location: 36096 - 36857 (-)
Gene ID: Rep_927_c_5_31
Type: CAZyme
Location: 36857 - 37984 (-)
Type: CAZyme
Location: 36857 - 37984 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_5_27 | vegetarian > omnivore | 1.03706 | 0.01613 |
| Rep_927_c_5_28 | vegan > omnivore | 1.33987 | 0.00918 |
| Rep_927_c_5_28 | vegetarian > omnivore | 1.33095 | 0.01613 |
| Rep_927_c_5_29 | vegan > omnivore | 1.29844 | 0.00918 |
| Rep_927_c_5_30 | vegan > omnivore | 1.40926 | 0.00918 |
| Rep_927_c_5_30 | vegetarian > omnivore | 1.52589 | 0.01613 |
| Rep_927_c_5_31 | vegetarian > omnivore | 1.11041 | 0.01613 |