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Cluster: Rep_927_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_927_c_4 Rep_927_c_4_19 19984 20757 - 3.A.1.14.19
TC Rep_927_c_4 Rep_927_c_4_20 20757 21806 - 3.A.1.14.5
STP Rep_927_c_4 Rep_927_c_4_21 21822 22937 - Peripla_BP_2
pfam Rep_927_c_4 Rep_927_c_4_22 23035 24174 - CCP_MauG
CAZyme Rep_927_c_4 Rep_927_c_4_23 24254 25372 - GH103
CAZyme Rep_927_c_4 Rep_927_c_4_24 25406 26209 - GT2
CAZyme Rep_927_c_4 Rep_927_c_4_25 26232 27113 - GT2
NULL(UNKNOWN) Rep_927_c_4 Rep_927_c_4_26 27106 28305 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_927_c_4 Rep_927_c_4_27 28313 29083 - GT25
Gene ID: Rep_927_c_4_19
Type: TC
Location: 19984 - 20757 (-)
Gene ID: Rep_927_c_4_20
Type: TC
Location: 20757 - 21806 (-)
Gene ID: Rep_927_c_4_21
Type: STP
Location: 21822 - 22937 (-)
Gene ID: Rep_927_c_4_22
Type: pfam
Location: 23035 - 24174 (-)
Gene ID: Rep_927_c_4_23
Type: CAZyme
Location: 24254 - 25372 (-)
Gene ID: Rep_927_c_4_24
Type: CAZyme
Location: 25406 - 26209 (-)
Gene ID: Rep_927_c_4_25
Type: CAZyme
Location: 26232 - 27113 (-)
Gene ID: Rep_927_c_4_26
Type:
Location: 27106 - 28305 (-)
Gene ID: Rep_927_c_4_27
Type: CAZyme
Location: 28313 - 29083 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_927_c_4_21 vegan > omnivore 1.64625 0.00918
Rep_927_c_4_21 vegetarian > omnivore 1.14090 0.01613
Rep_927_c_4_25 vegetarian > omnivore 2.11424 0.01613

🧭 Explore Read Mapping of CGC

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