Cluster: Rep_927_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_927_c_4 | Rep_927_c_4_7 | 7347 | 9746 | + | GT51 |
| TC | Rep_927_c_4 | Rep_927_c_4_8 | 9967 | 11871 | + | 2.A.108.2.10 |
| TC | Rep_927_c_4 | Rep_927_c_4_9 | 11900 | 12421 | + | 2.A.108.2.10 |
| pfam | Rep_927_c_4 | Rep_927_c_4_10 | 12537 | 13931 | + | YHS | FtrD-like |
| TC | Rep_927_c_4 | Rep_927_c_4_11 | 13931 | 15271 | + | 3.A.1.122.8 |
| pfam | Rep_927_c_4 | Rep_927_c_4_12 | 15258 | 16391 | + | FtsX | MacB_PCD |
| TC | Rep_927_c_4 | Rep_927_c_4_13 | 16393 | 17064 | + | 3.A.1.122.8 |
Gene ID: Rep_927_c_4_7
Type: CAZyme
Location: 7347 - 9746 (+)
Type: CAZyme
Location: 7347 - 9746 (+)
Gene ID: Rep_927_c_4_8
Type: TC
Location: 9967 - 11871 (+)
Type: TC
Location: 9967 - 11871 (+)
Gene ID: Rep_927_c_4_9
Type: TC
Location: 11900 - 12421 (+)
Type: TC
Location: 11900 - 12421 (+)
Gene ID: Rep_927_c_4_10
Type: pfam
Location: 12537 - 13931 (+)
Type: pfam
Location: 12537 - 13931 (+)
Gene ID: Rep_927_c_4_11
Type: TC
Location: 13931 - 15271 (+)
Type: TC
Location: 13931 - 15271 (+)
Gene ID: Rep_927_c_4_12
Type: pfam
Location: 15258 - 16391 (+)
Type: pfam
Location: 15258 - 16391 (+)
Gene ID: Rep_927_c_4_13
Type: TC
Location: 16393 - 17064 (+)
Type: TC
Location: 16393 - 17064 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_4_8 | vegetarian > vegan | 1.10691 | 0.03566 |
| Rep_927_c_4_10 | vegetarian > vegan | 1.48468 | 0.02923 |