Cluster: Rep_927_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_927
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_927_c_0 | Rep_927_c_0_60 | 67624 | 68568 | + | 2.A.16.1.2 |
| TF | Rep_927_c_0 | Rep_927_c_0_61 | 68646 | 69359 | - | GntR |
| CAZyme | Rep_927_c_0 | Rep_927_c_0_62 | 69554 | 73327 | + | GH77 | GT35 |
| pfam | Rep_927_c_0 | Rep_927_c_0_63 | 73337 | 74128 | + | Exo_endo_phos |
| TC | Rep_927_c_0 | Rep_927_c_0_64 | 74139 | 75803 | + | 4.A.1.1.11 |
Gene ID: Rep_927_c_0_60
Type: TC
Location: 67624 - 68568 (+)
Type: TC
Location: 67624 - 68568 (+)
Gene ID: Rep_927_c_0_61
Type: TF
Location: 68646 - 69359 (-)
Type: TF
Location: 68646 - 69359 (-)
Gene ID: Rep_927_c_0_62
Type: CAZyme
Location: 69554 - 73327 (+)
Type: CAZyme
Location: 69554 - 73327 (+)
Gene ID: Rep_927_c_0_63
Type: pfam
Location: 73337 - 74128 (+)
Type: pfam
Location: 73337 - 74128 (+)
Gene ID: Rep_927_c_0_64
Type: TC
Location: 74139 - 75803 (+)
Type: TC
Location: 74139 - 75803 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_927_c_0_64 | vegan > omnivore | 1.07788 | 0.00918 |