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Cluster: Rep_916_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_916_c_36 Rep_916_c_36_7 2796 3749 - GT9
NULL(UNKNOWN) Rep_916_c_36 Rep_916_c_36_8 3813 4715 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_916_c_36 Rep_916_c_36_9 4774 5814 - GT9
pfam Rep_916_c_36 Rep_916_c_36_10 5848 6261 - MliC
pfam Rep_916_c_36 Rep_916_c_36_11 6316 7638 - LysM_OapA
TC Rep_916_c_36 Rep_916_c_36_12 7908 8276 + 3.A.11.2.2
TC Rep_916_c_36 Rep_916_c_36_13 8440 9333 + 2.A.25.1.6
pfam Rep_916_c_36 Rep_916_c_36_14 9538 10203 + RadC | UPF0758_N
TC Rep_916_c_36 Rep_916_c_36_15 10472 11098 + 5.A.3.4.1
TC Rep_916_c_36 Rep_916_c_36_16 11107 13590 + 5.A.3.4.1
Gene ID: Rep_916_c_36_7
Type: CAZyme
Location: 2796 - 3749 (-)
Gene ID: Rep_916_c_36_8
Type:
Location: 3813 - 4715 (-)
Gene ID: Rep_916_c_36_9
Type: CAZyme
Location: 4774 - 5814 (-)
Gene ID: Rep_916_c_36_10
Type: pfam
Location: 5848 - 6261 (-)
Gene ID: Rep_916_c_36_11
Type: pfam
Location: 6316 - 7638 (-)
Gene ID: Rep_916_c_36_12
Type: TC
Location: 7908 - 8276 (+)
Gene ID: Rep_916_c_36_13
Type: TC
Location: 8440 - 9333 (+)
Gene ID: Rep_916_c_36_14
Type: pfam
Location: 9538 - 10203 (+)
Gene ID: Rep_916_c_36_15
Type: TC
Location: 10472 - 11098 (+)
Gene ID: Rep_916_c_36_16
Type: TC
Location: 11107 - 13590 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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