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Cluster: Rep_911_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_911_c_12 Rep_911_c_12_5 4784 6112 - 2.A.1.6.6
pfam Rep_911_c_12 Rep_911_c_12_6 6334 7395 - IMS | IMS_HHH | IMS_C | IMS_HHH_1
CAZyme Rep_911_c_12 Rep_911_c_12_7 7392 8168 - GH25
TC Rep_911_c_12 Rep_911_c_12_8 8226 9617 - 2.A.1.3.26
pfam Rep_911_c_12 Rep_911_c_12_9 9783 10400 - Lysine_decarbox | LDcluster4
TC Rep_911_c_12 Rep_911_c_12_10 10735 12330 + 2.A.109.2.3
pfam Rep_911_c_12 Rep_911_c_12_11 12422 12892 + SEC-C | YchJ_M-like
TC Rep_911_c_12 Rep_911_c_12_12 12942 13586 + 1.A.62.2.3
TC Rep_911_c_12 Rep_911_c_12_13 14303 15622 + 2.A.1.82.4
pfam Rep_911_c_12 Rep_911_c_12_14 15859 18078 + DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C
TC Rep_911_c_12 Rep_911_c_12_15 18225 19904 + 4.C.1.1.4
Gene ID: Rep_911_c_12_5
Type: TC
Location: 4784 - 6112 (-)
Gene ID: Rep_911_c_12_6
Type: pfam
Location: 6334 - 7395 (-)
Gene ID: Rep_911_c_12_7
Type: CAZyme
Location: 7392 - 8168 (-)
Gene ID: Rep_911_c_12_8
Type: TC
Location: 8226 - 9617 (-)
Gene ID: Rep_911_c_12_9
Type: pfam
Location: 9783 - 10400 (-)
Gene ID: Rep_911_c_12_10
Type: TC
Location: 10735 - 12330 (+)
Gene ID: Rep_911_c_12_11
Type: pfam
Location: 12422 - 12892 (+)
Gene ID: Rep_911_c_12_12
Type: TC
Location: 12942 - 13586 (+)
Gene ID: Rep_911_c_12_13
Type: TC
Location: 14303 - 15622 (+)
Gene ID: Rep_911_c_12_14
Type: pfam
Location: 15859 - 18078 (+)
Gene ID: Rep_911_c_12_15
Type: TC
Location: 18225 - 19904 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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