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Cluster: Rep_910_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_910_c_83 Rep_910_c_83_24 24919 25680 - GH25
NULL(UNKNOWN) Rep_910_c_83 Rep_910_c_83_25 25692 26660 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_910_c_83 Rep_910_c_83_26 26699 28087 - 2.A.1.3.26
pfam Rep_910_c_83 Rep_910_c_83_27 28252 30030 + choice_anch_I | choice_anch_I
pfam Rep_910_c_83 Rep_910_c_83_28 30081 30701 - Lysine_decarbox | LDcluster4
TC Rep_910_c_83 Rep_910_c_83_29 31029 32603 + 2.A.109.2.3
pfam Rep_910_c_83 Rep_910_c_83_30 32702 33184 + SEC-C | YchJ_M-like
TC Rep_910_c_83 Rep_910_c_83_31 33237 33881 + 1.A.62.2.3
NULL(UNKNOWN) Rep_910_c_83 Rep_910_c_83_32 33921 34178 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_910_c_83 Rep_910_c_83_33 34296 36515 + DNA_topoisoIV | DNA_gyraseA_C | DNA_gyraseA_C
TC Rep_910_c_83 Rep_910_c_83_34 36670 38349 + 4.C.1.1.4
Gene ID: Rep_910_c_83_24
Type: CAZyme
Location: 24919 - 25680 (-)
Gene ID: Rep_910_c_83_25
Type:
Location: 25692 - 26660 (-)
Gene ID: Rep_910_c_83_26
Type: TC
Location: 26699 - 28087 (-)
Gene ID: Rep_910_c_83_27
Type: pfam
Location: 28252 - 30030 (+)
Gene ID: Rep_910_c_83_28
Type: pfam
Location: 30081 - 30701 (-)
Gene ID: Rep_910_c_83_29
Type: TC
Location: 31029 - 32603 (+)
Gene ID: Rep_910_c_83_30
Type: pfam
Location: 32702 - 33184 (+)
Gene ID: Rep_910_c_83_31
Type: TC
Location: 33237 - 33881 (+)
Gene ID: Rep_910_c_83_32
Type:
Location: 33921 - 34178 (+)
Gene ID: Rep_910_c_83_33
Type: pfam
Location: 34296 - 36515 (+)
Gene ID: Rep_910_c_83_34
Type: TC
Location: 36670 - 38349 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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