Cluster: Rep_893_CGC8
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_893
- CGC Family ID: CGCFAM_10929
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_893_c_3 | Rep_893_c_3_49 | 53177 | 56728 | - | GT2 |
| TF | Rep_893_c_3 | Rep_893_c_3_50 | 56715 | 57011 | - | Whib |
| NULL(UNKNOWN) | Rep_893_c_3 | Rep_893_c_3_51 | 57229 | 58212 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_893_c_3 | Rep_893_c_3_52 | 58275 | 59036 | - | 3.A.1.103.5 |
| TC | Rep_893_c_3 | Rep_893_c_3_53 | 59037 | 59921 | - | 3.A.1.103.1 |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_54 | 59943 | 61946 | - | GT2 |
| pfam | Rep_893_c_3 | Rep_893_c_3_55 | 61943 | 63139 | - | FAD_binding_2 | Amino_oxidase | Thi4 | GLF | NAD_binding_8 |
| pfam | Rep_893_c_3 | Rep_893_c_3_56 | 63266 | 65311 | - | DUF6541 |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_57 | 65359 | 67296 | - | GT2 | GT2 |
| pfam | Rep_893_c_3 | Rep_893_c_3_58 | 67293 | 68582 | - | UDPG_MGDP_dh | NAD_Gly3P_dh_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| pfam | Rep_893_c_3 | Rep_893_c_3_59 | 68681 | 69778 | + | Epimerase_2 |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_60 | 69775 | 70929 | + | GT4 |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_61 | 70987 | 72135 | + | GT4 |
| NULL(UNKNOWN) | Rep_893_c_3 | Rep_893_c_3_62 | 72161 | 73420 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_63 | 73417 | 74511 | - | GT4 |
| CAZyme | Rep_893_c_3 | Rep_893_c_3_64 | 74710 | 75810 | + | GT4 |
Gene ID: Rep_893_c_3_49
Type: CAZyme
Location: 53177 - 56728 (-)
Type: CAZyme
Location: 53177 - 56728 (-)
Gene ID: Rep_893_c_3_50
Type: TF
Location: 56715 - 57011 (-)
Type: TF
Location: 56715 - 57011 (-)
Gene ID: Rep_893_c_3_51
Type:
Location: 57229 - 58212 (+)
Type:
Location: 57229 - 58212 (+)
Gene ID: Rep_893_c_3_52
Type: TC
Location: 58275 - 59036 (-)
Type: TC
Location: 58275 - 59036 (-)
Gene ID: Rep_893_c_3_53
Type: TC
Location: 59037 - 59921 (-)
Type: TC
Location: 59037 - 59921 (-)
Gene ID: Rep_893_c_3_54
Type: CAZyme
Location: 59943 - 61946 (-)
Type: CAZyme
Location: 59943 - 61946 (-)
Gene ID: Rep_893_c_3_55
Type: pfam
Location: 61943 - 63139 (-)
Type: pfam
Location: 61943 - 63139 (-)
Gene ID: Rep_893_c_3_56
Type: pfam
Location: 63266 - 65311 (-)
Type: pfam
Location: 63266 - 65311 (-)
Gene ID: Rep_893_c_3_57
Type: CAZyme
Location: 65359 - 67296 (-)
Type: CAZyme
Location: 65359 - 67296 (-)
Gene ID: Rep_893_c_3_58
Type: pfam
Location: 67293 - 68582 (-)
Type: pfam
Location: 67293 - 68582 (-)
Gene ID: Rep_893_c_3_59
Type: pfam
Location: 68681 - 69778 (+)
Type: pfam
Location: 68681 - 69778 (+)
Gene ID: Rep_893_c_3_60
Type: CAZyme
Location: 69775 - 70929 (+)
Type: CAZyme
Location: 69775 - 70929 (+)
Gene ID: Rep_893_c_3_61
Type: CAZyme
Location: 70987 - 72135 (+)
Type: CAZyme
Location: 70987 - 72135 (+)
Gene ID: Rep_893_c_3_62
Type:
Location: 72161 - 73420 (-)
Type:
Location: 72161 - 73420 (-)
Gene ID: Rep_893_c_3_63
Type: CAZyme
Location: 73417 - 74511 (-)
Type: CAZyme
Location: 73417 - 74511 (-)
Gene ID: Rep_893_c_3_64
Type: CAZyme
Location: 74710 - 75810 (+)
Type: CAZyme
Location: 74710 - 75810 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.