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Cluster: Rep_893_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_893_c_20 Rep_893_c_20_14 12494 12883 + 9.B.55.1.2
pfam Rep_893_c_20 Rep_893_c_20_15 12886 13389 + tRNA_edit
pfam Rep_893_c_20 Rep_893_c_20_16 13455 14969 - tRNA-synt_1c | Anticodon_2
TC Rep_893_c_20 Rep_893_c_20_17 15017 16579 - 2.A.1.3.49
STP Rep_893_c_20 Rep_893_c_20_18 16884 18101 + Aminotran_1_2
CAZyme Rep_893_c_20 Rep_893_c_20_19 18277 19491 + GH179
TC Rep_893_c_20 Rep_893_c_20_20 19550 21205 + 2.A.1.1.26
pfam Rep_893_c_20 Rep_893_c_20_21 21196 22008 - PNP_UDP_1
TC Rep_893_c_20 Rep_893_c_20_22 22011 23537 - 2.A.39.1.6
sulfatase Rep_893_c_20 Rep_893_c_20_23 23610 24404 - S1_6
TC Rep_893_c_20 Rep_893_c_20_24 24453 25883 - 2.A.25.1.5
Gene ID: Rep_893_c_20_14
Type: TC
Location: 12494 - 12883 (+)
Gene ID: Rep_893_c_20_15
Type: pfam
Location: 12886 - 13389 (+)
Gene ID: Rep_893_c_20_16
Type: pfam
Location: 13455 - 14969 (-)
Gene ID: Rep_893_c_20_17
Type: TC
Location: 15017 - 16579 (-)
Gene ID: Rep_893_c_20_18
Type: STP
Location: 16884 - 18101 (+)
Gene ID: Rep_893_c_20_19
Type: CAZyme
Location: 18277 - 19491 (+)
Gene ID: Rep_893_c_20_20
Type: TC
Location: 19550 - 21205 (+)
Gene ID: Rep_893_c_20_21
Type: pfam
Location: 21196 - 22008 (-)
Gene ID: Rep_893_c_20_22
Type: TC
Location: 22011 - 23537 (-)
Gene ID: Rep_893_c_20_23
Type: sulfatase
Location: 23610 - 24404 (-)
Gene ID: Rep_893_c_20_24
Type: TC
Location: 24453 - 25883 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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