Cluster: Rep_893_CGC36
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_893
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_893_c_18 | Rep_893_c_18_15 | 19247 | 20785 | + | CBM35 | GH76 |
| TF | Rep_893_c_18 | Rep_893_c_18_16 | 20869 | 21954 | + | GntR |
| STP | Rep_893_c_18 | Rep_893_c_18_17 | 22034 | 23356 | - | SBP_bac_1 |
| TC | Rep_893_c_18 | Rep_893_c_18_18 | 23392 | 24309 | - | 3.A.1.1.11 |
| TC | Rep_893_c_18 | Rep_893_c_18_19 | 24296 | 25261 | - | 3.A.1.1.36 |
| CAZyme | Rep_893_c_18 | Rep_893_c_18_20 | 25254 | 26576 | - | GH125 |
| peptidase | Rep_893_c_18 | Rep_893_c_18_21 | 26644 | 28737 | + | M13.009 |
| peptidase | Rep_893_c_18 | Rep_893_c_18_22 | 28882 | 31464 | + | M01.009 |
| TC | Rep_893_c_18 | Rep_893_c_18_23 | 31628 | 31858 | + | 4.A.1.1.9 |
| TC | Rep_893_c_18 | Rep_893_c_18_24 | 31855 | 32325 | + | 4.A.1.1.1 |
| pfam | Rep_893_c_18 | Rep_893_c_18_25 | 32352 | 32795 | - | Ferritin |
| CAZyme | Rep_893_c_18 | Rep_893_c_18_26 | 32910 | 35084 | - | GH77 |
| TC | Rep_893_c_18 | Rep_893_c_18_27 | 35137 | 35487 | - | 4.A.1.1.5 |
Gene ID: Rep_893_c_18_15
Type: CAZyme
Location: 19247 - 20785 (+)
Type: CAZyme
Location: 19247 - 20785 (+)
Gene ID: Rep_893_c_18_16
Type: TF
Location: 20869 - 21954 (+)
Type: TF
Location: 20869 - 21954 (+)
Gene ID: Rep_893_c_18_17
Type: STP
Location: 22034 - 23356 (-)
Type: STP
Location: 22034 - 23356 (-)
Gene ID: Rep_893_c_18_18
Type: TC
Location: 23392 - 24309 (-)
Type: TC
Location: 23392 - 24309 (-)
Gene ID: Rep_893_c_18_19
Type: TC
Location: 24296 - 25261 (-)
Type: TC
Location: 24296 - 25261 (-)
Gene ID: Rep_893_c_18_20
Type: CAZyme
Location: 25254 - 26576 (-)
Type: CAZyme
Location: 25254 - 26576 (-)
Gene ID: Rep_893_c_18_21
Type: peptidase
Location: 26644 - 28737 (+)
Type: peptidase
Location: 26644 - 28737 (+)
Gene ID: Rep_893_c_18_22
Type: peptidase
Location: 28882 - 31464 (+)
Type: peptidase
Location: 28882 - 31464 (+)
Gene ID: Rep_893_c_18_23
Type: TC
Location: 31628 - 31858 (+)
Type: TC
Location: 31628 - 31858 (+)
Gene ID: Rep_893_c_18_24
Type: TC
Location: 31855 - 32325 (+)
Type: TC
Location: 31855 - 32325 (+)
Gene ID: Rep_893_c_18_25
Type: pfam
Location: 32352 - 32795 (-)
Type: pfam
Location: 32352 - 32795 (-)
Gene ID: Rep_893_c_18_26
Type: CAZyme
Location: 32910 - 35084 (-)
Type: CAZyme
Location: 32910 - 35084 (-)
Gene ID: Rep_893_c_18_27
Type: TC
Location: 35137 - 35487 (-)
Type: TC
Location: 35137 - 35487 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.