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Cluster: Rep_893_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_893_c_15 Rep_893_c_15_30 31241 32179 - 3.A.1.1.18
TC Rep_893_c_15 Rep_893_c_15_31 32190 33116 - 3.A.1.1.21
CAZyme Rep_893_c_15 Rep_893_c_15_32 33358 34815 + GH29
pfam Rep_893_c_15 Rep_893_c_15_33 34805 39157 - DEAD | Helicase_C | OB_NTP_bind | DUF3418 | DUF3418 | HA2_C
TC Rep_893_c_15 Rep_893_c_15_34 39176 40018 - 3.A.1.1.44
TC Rep_893_c_15 Rep_893_c_15_35 40020 40952 - 3.A.1.1.11
STP Rep_893_c_15 Rep_893_c_15_36 40949 42322 - SBP_bac_1
CAZyme Rep_893_c_15 Rep_893_c_15_37 42336 45362 - GH38
TC Rep_893_c_15 Rep_893_c_15_38 45387 46844 + 2.A.2.3.12
Gene ID: Rep_893_c_15_30
Type: TC
Location: 31241 - 32179 (-)
Gene ID: Rep_893_c_15_31
Type: TC
Location: 32190 - 33116 (-)
Gene ID: Rep_893_c_15_32
Type: CAZyme
Location: 33358 - 34815 (+)
Gene ID: Rep_893_c_15_33
Type: pfam
Location: 34805 - 39157 (-)
Gene ID: Rep_893_c_15_34
Type: TC
Location: 39176 - 40018 (-)
Gene ID: Rep_893_c_15_35
Type: TC
Location: 40020 - 40952 (-)
Gene ID: Rep_893_c_15_36
Type: STP
Location: 40949 - 42322 (-)
Gene ID: Rep_893_c_15_37
Type: CAZyme
Location: 42336 - 45362 (-)
Gene ID: Rep_893_c_15_38
Type: TC
Location: 45387 - 46844 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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