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Cluster: Rep_893_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_893_c_11 Rep_893_c_11_10 7798 9738 - GH2
TF Rep_893_c_11 Rep_893_c_11_11 9791 10765 - LacI
TC Rep_893_c_11 Rep_893_c_11_12 11019 12368 + 3.A.1.1.36
TC Rep_893_c_11 Rep_893_c_11_13 12377 13261 + 3.A.1.1.36
TC Rep_893_c_11 Rep_893_c_11_14 13258 14208 + 3.A.1.1.36
NULL(UNKNOWN) Rep_893_c_11 Rep_893_c_11_15 14814 15005 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_893_c_11 Rep_893_c_11_16 15148 19260 + Metallophos | Big_2 | NAGPA
CAZyme Rep_893_c_11 Rep_893_c_11_17 19362 20705 - GH29
TC Rep_893_c_11 Rep_893_c_11_18 20720 21553 - 3.A.1.1.36
TC Rep_893_c_11 Rep_893_c_11_19 21561 22487 - 3.A.1.1.36
TC Rep_893_c_11 Rep_893_c_11_20 22499 23716 - 3.A.1.1.40
Gene ID: Rep_893_c_11_10
Type: CAZyme
Location: 7798 - 9738 (-)
Gene ID: Rep_893_c_11_11
Type: TF
Location: 9791 - 10765 (-)
Gene ID: Rep_893_c_11_12
Type: TC
Location: 11019 - 12368 (+)
Gene ID: Rep_893_c_11_13
Type: TC
Location: 12377 - 13261 (+)
Gene ID: Rep_893_c_11_14
Type: TC
Location: 13258 - 14208 (+)
Gene ID: Rep_893_c_11_15
Type:
Location: 14814 - 15005 (+)
Gene ID: Rep_893_c_11_16
Type: pfam
Location: 15148 - 19260 (+)
Gene ID: Rep_893_c_11_17
Type: CAZyme
Location: 19362 - 20705 (-)
Gene ID: Rep_893_c_11_18
Type: TC
Location: 20720 - 21553 (-)
Gene ID: Rep_893_c_11_19
Type: TC
Location: 21561 - 22487 (-)
Gene ID: Rep_893_c_11_20
Type: TC
Location: 22499 - 23716 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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