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Cluster: Rep_893_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_893_c_9 Rep_893_c_9_33 32610 34964 + GH13_11
pfam Rep_893_c_9 Rep_893_c_9_34 34957 36057 + tRNA-synt_1b
TC Rep_893_c_9 Rep_893_c_9_35 36144 36866 + 2.A.89.3.2
NULL(UNKNOWN) Rep_893_c_9 Rep_893_c_9_36 36975 37694 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_893_c_9 Rep_893_c_9_37 37710 40079 - GT35
CAZyme Rep_893_c_9 Rep_893_c_9_38 40308 42437 + GH13_3
CAZyme Rep_893_c_9 Rep_893_c_9_39 42536 44350 + GH13_16
pfam Rep_893_c_9 Rep_893_c_9_40 44343 45752 + APH
CAZyme Rep_893_c_9 Rep_893_c_9_41 45855 48044 + CBM48 | GH13_9
Gene ID: Rep_893_c_9_33
Type: CAZyme
Location: 32610 - 34964 (+)
Gene ID: Rep_893_c_9_34
Type: pfam
Location: 34957 - 36057 (+)
Gene ID: Rep_893_c_9_35
Type: TC
Location: 36144 - 36866 (+)
Gene ID: Rep_893_c_9_36
Type:
Location: 36975 - 37694 (+)
Gene ID: Rep_893_c_9_37
Type: CAZyme
Location: 37710 - 40079 (-)
Gene ID: Rep_893_c_9_38
Type: CAZyme
Location: 40308 - 42437 (+)
Gene ID: Rep_893_c_9_39
Type: CAZyme
Location: 42536 - 44350 (+)
Gene ID: Rep_893_c_9_40
Type: pfam
Location: 44343 - 45752 (+)
Gene ID: Rep_893_c_9_41
Type: CAZyme
Location: 45855 - 48044 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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