Cluster: Rep_893_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_893
- CGC Family ID: CGCFAM_05159
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_893_c_7 | Rep_893_c_7_15 | 18196 | 19596 | + | 2.A.1.2.94 |
| CAZyme | Rep_893_c_7 | Rep_893_c_7_16 | 19619 | 20908 | + | GH1 |
| CAZyme | Rep_893_c_7 | Rep_893_c_7_17 | 21004 | 23973 | - | GH106 |
| CAZyme | Rep_893_c_7 | Rep_893_c_7_18 | 24060 | 26945 | - | CBM67 | GH78 |
| TC | Rep_893_c_7 | Rep_893_c_7_19 | 27014 | 28333 | - | 2.A.1.1.27 |
Gene ID: Rep_893_c_7_15
Type: TC
Location: 18196 - 19596 (+)
Type: TC
Location: 18196 - 19596 (+)
Gene ID: Rep_893_c_7_16
Type: CAZyme
Location: 19619 - 20908 (+)
Type: CAZyme
Location: 19619 - 20908 (+)
Gene ID: Rep_893_c_7_17
Type: CAZyme
Location: 21004 - 23973 (-)
Type: CAZyme
Location: 21004 - 23973 (-)
Gene ID: Rep_893_c_7_18
Type: CAZyme
Location: 24060 - 26945 (-)
Type: CAZyme
Location: 24060 - 26945 (-)
Gene ID: Rep_893_c_7_19
Type: TC
Location: 27014 - 28333 (-)
Type: TC
Location: 27014 - 28333 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.