Cluster: Rep_893_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_893
- CGC Family ID: CGCFAM_00771
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_893_c_6 | Rep_893_c_6_35 | 39348 | 40271 | - | 3.A.1.1.36 |
| TC | Rep_893_c_6 | Rep_893_c_6_36 | 40261 | 41178 | - | 3.A.1.1.11 |
| STP | Rep_893_c_6 | Rep_893_c_6_37 | 41190 | 42497 | - | SBP_bac_1 |
| pfam | Rep_893_c_6 | Rep_893_c_6_38 | 42753 | 43871 | + | ROK |
| CAZyme | Rep_893_c_6 | Rep_893_c_6_39 | 43912 | 45243 | + | GH29 |
Gene ID: Rep_893_c_6_35
Type: TC
Location: 39348 - 40271 (-)
Type: TC
Location: 39348 - 40271 (-)
Gene ID: Rep_893_c_6_36
Type: TC
Location: 40261 - 41178 (-)
Type: TC
Location: 40261 - 41178 (-)
Gene ID: Rep_893_c_6_37
Type: STP
Location: 41190 - 42497 (-)
Type: STP
Location: 41190 - 42497 (-)
Gene ID: Rep_893_c_6_38
Type: pfam
Location: 42753 - 43871 (+)
Type: pfam
Location: 42753 - 43871 (+)
Gene ID: Rep_893_c_6_39
Type: CAZyme
Location: 43912 - 45243 (+)
Type: CAZyme
Location: 43912 - 45243 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.