Cluster: Rep_893_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_893
- CGC Family ID: CGCFAM_03556
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_893_c_6 | Rep_893_c_6_27 | 28431 | 30830 | - | 3.A.3.23.1 |
| TC | Rep_893_c_6 | Rep_893_c_6_28 | 30830 | 31933 | - | 2.A.109.1.7 |
| pfam | Rep_893_c_6 | Rep_893_c_6_29 | 32103 | 34211 | - | DEAD | Helicase_C | UVR | ResIII | UvrB | UvrB_inter |
| CAZyme | Rep_893_c_6 | Rep_893_c_6_30 | 34341 | 36047 | + | GH13_31 |
Gene ID: Rep_893_c_6_27
Type: TC
Location: 28431 - 30830 (-)
Type: TC
Location: 28431 - 30830 (-)
Gene ID: Rep_893_c_6_28
Type: TC
Location: 30830 - 31933 (-)
Type: TC
Location: 30830 - 31933 (-)
Gene ID: Rep_893_c_6_29
Type: pfam
Location: 32103 - 34211 (-)
Type: pfam
Location: 32103 - 34211 (-)
Gene ID: Rep_893_c_6_30
Type: CAZyme
Location: 34341 - 36047 (+)
Type: CAZyme
Location: 34341 - 36047 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.