Cluster: Rep_893_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_893
- CGC Family ID: CGCFAM_01212
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_893_c_0 | Rep_893_c_0_172 | 171975 | 172736 | + | 3.A.1.147.1 |
| NULL(UNKNOWN) | Rep_893_c_0 | Rep_893_c_0_173 | 172721 | 174424 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_893_c_0 | Rep_893_c_0_174 | 174572 | 176347 | + | 3.A.1.120.6 |
| TC | Rep_893_c_0 | Rep_893_c_0_175 | 176427 | 177494 | - | 3.A.1.2.21 |
| TC | Rep_893_c_0 | Rep_893_c_0_176 | 177553 | 178656 | - | 3.A.1.2.13 |
| TC | Rep_893_c_0 | Rep_893_c_0_177 | 178674 | 180260 | - | 3.A.1.2.19 |
| CAZyme | Rep_893_c_0 | Rep_893_c_0_178 | 180501 | 183197 | + | GH172 |
| pfam | Rep_893_c_0 | Rep_893_c_0_179 | 183177 | 184127 | - | GHMP_kinases_N | GHMP_kinases_C |
| pfam | Rep_893_c_0 | Rep_893_c_0_180 | 184120 | 185058 | - | RrnaAD |
| CAZyme | Rep_893_c_0 | Rep_893_c_0_181 | 185086 | 186549 | - | GH23 |
| CAZyme | Rep_893_c_0 | Rep_893_c_0_182 | 186504 | 187631 | - | GH23 |
Gene ID: Rep_893_c_0_172
Type: TC
Location: 171975 - 172736 (+)
Type: TC
Location: 171975 - 172736 (+)
Gene ID: Rep_893_c_0_173
Type:
Location: 172721 - 174424 (+)
Type:
Location: 172721 - 174424 (+)
Gene ID: Rep_893_c_0_174
Type: TC
Location: 174572 - 176347 (+)
Type: TC
Location: 174572 - 176347 (+)
Gene ID: Rep_893_c_0_175
Type: TC
Location: 176427 - 177494 (-)
Type: TC
Location: 176427 - 177494 (-)
Gene ID: Rep_893_c_0_176
Type: TC
Location: 177553 - 178656 (-)
Type: TC
Location: 177553 - 178656 (-)
Gene ID: Rep_893_c_0_177
Type: TC
Location: 178674 - 180260 (-)
Type: TC
Location: 178674 - 180260 (-)
Gene ID: Rep_893_c_0_178
Type: CAZyme
Location: 180501 - 183197 (+)
Type: CAZyme
Location: 180501 - 183197 (+)
Gene ID: Rep_893_c_0_179
Type: pfam
Location: 183177 - 184127 (-)
Type: pfam
Location: 183177 - 184127 (-)
Gene ID: Rep_893_c_0_180
Type: pfam
Location: 184120 - 185058 (-)
Type: pfam
Location: 184120 - 185058 (-)
Gene ID: Rep_893_c_0_181
Type: CAZyme
Location: 185086 - 186549 (-)
Type: CAZyme
Location: 185086 - 186549 (-)
Gene ID: Rep_893_c_0_182
Type: CAZyme
Location: 186504 - 187631 (-)
Type: CAZyme
Location: 186504 - 187631 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Actinomycetes
Order
Actinomycetales
Family
Actinomycetaceae
Genus
Pauljensenia
Species
Pauljensenia radingae_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.