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Cluster: Rep_892_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_892_c_1 Rep_892_c_1_6 6524 7987 + 2.A.1.67.1
TF Rep_892_c_1 Rep_892_c_1_7 8108 9175 - LacI
TC Rep_892_c_1 Rep_892_c_1_8 9399 10703 + 3.A.1.1.21
TC Rep_892_c_1 Rep_892_c_1_9 10713 11708 + 3.A.1.1.7
TC Rep_892_c_1 Rep_892_c_1_10 11705 12568 + 3.A.1.1.41
CAZyme Rep_892_c_1 Rep_892_c_1_11 12565 14049 + GH43_12
CAZyme Rep_892_c_1 Rep_892_c_1_12 14071 16392 + GH3
CAZyme Rep_892_c_1 Rep_892_c_1_13 16457 17464 + CE7
pfam Rep_892_c_1 Rep_892_c_1_14 17640 18869 - GlcNAc_2-epim
pfam Rep_892_c_1 Rep_892_c_1_15 18975 19940 - Sugar-bind
TC Rep_892_c_1 Rep_892_c_1_16 20077 21087 + 3.A.1.2.6
TC Rep_892_c_1 Rep_892_c_1_17 21137 22168 + 3.A.1.2.1
TC Rep_892_c_1 Rep_892_c_1_18 22174 23733 + 3.A.1.2.20
Gene ID: Rep_892_c_1_6
Type: TC
Location: 6524 - 7987 (+)
Gene ID: Rep_892_c_1_7
Type: TF
Location: 8108 - 9175 (-)
Gene ID: Rep_892_c_1_8
Type: TC
Location: 9399 - 10703 (+)
Gene ID: Rep_892_c_1_9
Type: TC
Location: 10713 - 11708 (+)
Gene ID: Rep_892_c_1_10
Type: TC
Location: 11705 - 12568 (+)
Gene ID: Rep_892_c_1_11
Type: CAZyme
Location: 12565 - 14049 (+)
Gene ID: Rep_892_c_1_12
Type: CAZyme
Location: 14071 - 16392 (+)
Gene ID: Rep_892_c_1_13
Type: CAZyme
Location: 16457 - 17464 (+)
Gene ID: Rep_892_c_1_14
Type: pfam
Location: 17640 - 18869 (-)
Gene ID: Rep_892_c_1_15
Type: pfam
Location: 18975 - 19940 (-)
Gene ID: Rep_892_c_1_16
Type: TC
Location: 20077 - 21087 (+)
Gene ID: Rep_892_c_1_17
Type: TC
Location: 21137 - 22168 (+)
Gene ID: Rep_892_c_1_18
Type: TC
Location: 22174 - 23733 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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