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Cluster: Rep_892_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_892_c_41 Rep_892_c_41_1 117 1124 + 3.A.1.1.32
TC Rep_892_c_41 Rep_892_c_41_2 1082 1966 + 3.A.1.1.32
NULL(UNKNOWN) Rep_892_c_41 Rep_892_c_41_3 2366 2575 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_892_c_41 Rep_892_c_41_4 2721 4916 - CBM48 | GH13_9
CAZyme Rep_892_c_41 Rep_892_c_41_5 5011 7110 - GH13_3
TC Rep_892_c_41 Rep_892_c_41_6 7140 7892 - 2.A.89.3.2
pfam Rep_892_c_41 Rep_892_c_41_7 8012 9112 - tRNA-synt_1b
CAZyme Rep_892_c_41 Rep_892_c_41_8 9174 11465 - GH13_11
Gene ID: Rep_892_c_41_1
Type: TC
Location: 117 - 1124 (+)
Gene ID: Rep_892_c_41_2
Type: TC
Location: 1082 - 1966 (+)
Gene ID: Rep_892_c_41_3
Type:
Location: 2366 - 2575 (+)
Gene ID: Rep_892_c_41_4
Type: CAZyme
Location: 2721 - 4916 (-)
Gene ID: Rep_892_c_41_5
Type: CAZyme
Location: 5011 - 7110 (-)
Gene ID: Rep_892_c_41_6
Type: TC
Location: 7140 - 7892 (-)
Gene ID: Rep_892_c_41_7
Type: pfam
Location: 8012 - 9112 (-)
Gene ID: Rep_892_c_41_8
Type: CAZyme
Location: 9174 - 11465 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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